justin/crop-chem-docs
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
28 Commits 1 Branch 0 Tags
main
Commit Graph

3 Commits

Author SHA1 Message Date
justin a97107de46 docker: production image + Gitea Actions for monthly refresh
Image rebuild (skip scrape) / build (push) Failing after 1h37m12s
Details 
Dockerfile: self-contained image with corpus + Chroma + BM25 baked
in. Drawbar's compose pulls + runs without volume mounts. Built from
sources.json (labels schema), PRODUCT_NAME=crop_chem by default,
HYBRID_SEARCH=true (always-on for production quality). RERANK_URL +
OLLAMA_URL get set at compose time.

.gitea/workflows/refresh.yml: monthly cron (1st @ 06:00 UTC) does
full scrape → reindex → image push. Scrapes Bayer (~30 min) +
EPA PPLS row-crop filtered (~7h). Skips reindex+push if no corpus
diff. Tags pushed: :latest, :<sha12>, :corpus-<YYYY.MM.DD>.

.gitea/workflows/image-only.yml: on-demand or auto on code-only
pushes to main (paths: docs_mcp/, rag/, scrape/, requirements.txt,
Dockerfile, sources.json). Reindexes from committed corpus, builds
image, pushes. ~10 min vs ~9h full refresh.

.gitignore: corpus/ now COMMITTED (4,159 labels, 265 MB of .md +
sidecars). Lets image-only.yml rebuild indexes without re-scraping.
chroma/ + bm25/ still gitignored (regenerable binary indexes).

.dockerignore: drops venv, eval results, PLAN/README/CLAUDE.md,
deploy/, .git/ — keeps the image lean. corpus + chroma + bm25
explicitly NOT in dockerignore (those go INTO the image).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-24 12:32:41 -04:00
justin e9250de8e7 scrape: Phase 1 — Bayer + EPA PPLS scrapers with unified label schema 
Adapts the docs-mcp-template scraping layer for the pesticide-labels
domain. The template's bundle/version/platform concepts don't map to
labels (there's no "Bayer 8.1.0" — there's just the current accepted
label per EPA Reg No), so the scraper layer is reshaped around a
"source" abstraction: one source per manufacturer or regulator, one
per-product label per source.

Sources shipped:
  - bayer       — Bayer Crop Science US (Next.js JSON catalog + Scene7 PDFs)
  - epa_ppls    — EPA PPLS via PPIS bulk index + undocumented /cswu/ ORDS REST endpoint

Canonical sidecar schema (see scrape/README.md) unifies fields across
sources:
  - active_ingredients always [{name, cas, percent}]
  - label/* nested (url, filename, accepted_date, last_modified,
    page_count, text_layer)
  - all timestamps normalized to ISO 8601 UTC
  - signal_word surfaced (operationally critical for the farmer advisor)
  - source_key + epa_reg_no separate per-source PK from the
    cross-source join key

bundles.json → sources.json. --bundle → --source. The runner walks
sources.json and dispatches by id; per-source modules remain
independently runnable for development.

PLAN.md gets a one-block domain note up front; later phases (chunking,
embeddings, retrieval, eval) still apply as written.

Smoke test:
  python -m scrape.runner --all --limit 2     # works
  python -m scrape.runner --source bayer --limit 3    # 3 written, idempotent re-run skips
  python -m scrape.runner --source epa_ppls --reg-no 524-475   # Roundup Ultra, 167 pages, ISO last_modified

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-23 18:27:07 -04:00
justin 9ba615c8ee initial: docs-mcp-template — build guide + scaffolded server 
Template for building hosted MCP servers over a product's public
documentation. Distilled from one production build; everything
product-specific has been factored out.

Contents:

- PLAN.md — comprehensive build guide. 13 phases from project
  skeleton through weekly_digest. Includes the gotchas
  ("fetch-depth: 0 always", reranker per-pair token limit,
  Cloudflare body cap, dash-not-bash on Gitea runners), the
  decisions worth carrying forward, and a per-product
  customization checklist.

- CLAUDE.md — guidance for Claude Code working in a clone of this
  template. Phase identification table, conventions (env-gating +
  operator confirmation for side-effecting tools, defensive
  fallback for retrieval components), common commands.

- README.md — quick-start summary.

Scaffolded code (all signature-stable, with NotImplementedError
stubs where phase-specific work is required):

  docs_mcp/server.py    FastMCP server, stateless_http=True, with
                        search_docs / get_page / list_versions
                        baseline tools and commented stubs for the
                        rest of the phase set.
  docs_mcp/usage.py     TimedCall telemetry, JSONL, daily rotation,
                        90-day retention. Reusable as-is.
  rag/embeddings.py     Ollama embedder (nomic-embed-text default),
                        load-balanced across N URLs. Reusable.
  rag/chunk.py          Paragraph-aware chunker with synthetic
                        chunk 0. Per-product tunable.
  rag/index.py          Chroma + BM25 builder. --rebuild and
                        --bm25-only flags.
  rag/bm25.py           SQLite FTS5 lexical index. Reusable.
  scrape/changelog.py   --cached / --ref / --json / --history-out.
                        Reusable.
  scrape/README.md      What you write per-product.
  eval/queries.jsonl.example
                        Curate ~25 hand-labeled queries here.
  eval/retrievers.py    Retriever protocol + stub classes.
  eval/run_eval.py      MRR / Recall@K / nDCG@K harness skeleton.
  scripts/usage_report.py
                        Standalone log analyzer; the
                        FOLLOW-UP CHECKS pattern noted in the
                        module docstring.
  scripts/registry_gc.py
                        Gitea container registry cleanup. Reusable.

Deployment + CI:

  Dockerfile               Python 3.12-slim; COPY corpus + chroma
                           + bm25 last for cache efficiency.
  deploy/docker-compose.yml MCP + reranker sidecar + Watchtower.
                           Templated with <placeholders>.
  .gitea/workflows/refresh.yml    Weekly cron + manual dispatch.
                                  fetch-depth: 0, retry-on-race,
                                  three-tag image scheme.
  .gitea/workflows/image-only.yml Code-only ship cycle, ~18min.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-22 09:18:17 -04:00