Files
seed-mcp/.gitea/workflows/image-only.yml
T
justin 0e625553e5 gh_plot_reports corpus (4,299 plots) + concurrency + 4-GPU pool
CORPUS — 4,299 GH plot reports added (3,797 written + 502 from the
earlier slow run + 319 sitemap-listed URLs that 404'd as
discontinued). Combined with prior 760 varieties + 14 AgriPro
trials = 5,073 total chunks now indexed.

scrape/sources/gh_plot_reports.py — concurrency speedup:
- 4 worker threads (ThreadPoolExecutor), each with its own
  requests.Session for connection-pool efficiency.
- Shared class-level rate limiter (0.25 sec between ANY two
  requests across all threads). Net throughput ~4 req/sec —
  well below any rate-limit threshold a public site enforces.
- Diagnosis vs original 1 req/sec: GH had ZERO rate limiting,
  zero 429s, zero retries. The 1 sec self-throttle was just too
  conservative. Bench:
    1 worker  / 1.0 sec throttle:  ~0.4 plots/sec (190 min ETA)
    4 workers / 0.25 sec throttle: ~3 plots/sec  (~25 min actual)

rag/chunk.py — chunk size cap for nomic-embed-text's 2048-token
context window:
- Empirically tested: failure threshold is ~5,250 chars on
  numeric-heavy trial chunks (chars/token ratio 2.4 vs 3.5 for
  prose). Cap at 4,500 chars to be safely under at worst-case
  2.2 chars/token.
- Applied to BOTH variety and trial chunks. Marked truncated
  chunks with metadata.embed_truncated = True; FULL text stays
  in the on-disk .md for get_page to return verbatim.

.gitea/workflows/{refresh,image-only}.yml — OLLAMA_URL pool
restructured for the 4 GPU-pinned endpoints. Bench (50-chunk
batches on nomic-embed-text):

    .0.125:11434  (RTX 40-series)  242 embeds/sec  ← weight ×4
    .0.2:11436    (GPU-pinned)     108 embeds/sec  ← weight ×2
    .0.2:11435    (GPU-pinned)      72 embeds/sec  ← weight ×1
    localhost     (TITAN X)         37 embeds/sec  ← weight ×1

Weighting is done by listing the URL multiple times in
OLLAMA_URL since the embedder uses round-robin. .0.2:11434 is
explicitly EXCLUDED — it isn't pinned to a specific GPU.

Combined index rebuild for 5,073 chunks now finishes in ~3 min
(was 19+ on the single-endpoint pool).

Smoke tests:
✓ list_versions: 5,073 docs across 6 sources, 2 vendors, 6
  brands, 4 crops (corn 2711, soy 2016, silage 223, wheat 123).
✓ search_trials({crop=corn, state=IA, year=2024}): 3 IA 2024
  corn trials surfaced.
✓ search_trials("Phytophthora resistance soybean trial"): NK
  NK43-W1XFS top-1 in LA 2024 trial (cross-vendor result).
✓ search_trials("AP Iliad Idaho wheat"): AgriPro Washington/N
  Idaho 2025 trial surfaced.
✓ search_trials(product=DKC65-95): 3 corn trials containing
  that hybrid in IL/IA 2024.
✓ search_trials(product=NK1701): 3 corn trials in AR/MS 2024.
✓ Product filter correctly returns EMPTY for products that
  aren't in the corpus (DKC65-20 is a 2023 product; 2023 plots
  deferred). Anti-hallucination contract preserved.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 16:46:35 -04:00

120 lines
4.4 KiB
YAML

name: Image rebuild (skip scrape)
# Fast path for code-only changes. Skips the scrape and goes straight
# to: rebuild indexes (from corpus already committed on main) + image
# build + push. Runtime ~10 min vs ~2-3 h for the full monthly refresh.
#
# Use when a PR only changes code/config — anything where the upstream
# seed catalogs haven't moved but we want the new Python in the
# running image.
on:
workflow_dispatch:
push:
branches:
- main
paths:
- "docs_mcp/**"
- "rag/**"
- "scrape/**"
- "requirements.txt"
- "Dockerfile"
- "sources.json"
# If multiple pushes land in quick succession, cancel the older one
# rather than queueing both — each run is non-trivial and the older
# commit's image just gets overwritten by the newer one anyway.
concurrency:
group: image-only
cancel-in-progress: true
env:
REGISTRY_PUSH: 192.168.0.2:1234
REGISTRY_PULL: git.jpaul.io
IMAGE: ${{ github.repository_owner }}/${{ github.event.repository.name }}
# 4-GPU pool, weighted toward .0.125 (4090). See refresh.yml for the
# bench numbers. .0.2:11434 excluded — not GPU-pinned.
OLLAMA_URL: http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.2:11436,http://192.168.0.2:11436,http://192.168.0.2:11435,http://localhost:11434
EMBED_MODEL: nomic-embed-text
PRODUCT_NAME: crop_seed
jobs:
build:
runs-on: docker
container:
image: catthehacker/ubuntu:act-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install dependencies
run: |
python -m pip install -q --upgrade pip
python -m pip install -q -r requirements.txt
- name: Verify committed corpus is present
run: |
test -d corpus || { echo "ERROR: corpus/ missing on this ref"; exit 1; }
n_md=$(find corpus -name '*.md' | wc -l)
n_json=$(find corpus -name '*.json' | wc -l)
echo "corpus: $(du -sh corpus | cut -f1) on disk, ${n_md} .md / ${n_json} .json"
- name: Rebuild indexes from committed corpus
run: python -m rag.index --rebuild
- name: Log in to Gitea container registry
run: echo "${{ secrets.REGISTRY_TOKEN }}" | docker login "${REGISTRY_PUSH}" -u "${{ github.repository_owner }}" --password-stdin
- name: Build & push image
run: |
SHA_TAG=$(echo "$GITHUB_SHA" | cut -c1-12)
CORPUS_TAG="corpus-$(date -u +%Y.%m.%d)"
docker build \
-t "${REGISTRY_PUSH}/${IMAGE}:latest" \
-t "${REGISTRY_PUSH}/${IMAGE}:${SHA_TAG}" \
-t "${REGISTRY_PUSH}/${IMAGE}:${CORPUS_TAG}" \
.
docker push "${REGISTRY_PUSH}/${IMAGE}:latest"
docker push "${REGISTRY_PUSH}/${IMAGE}:${SHA_TAG}"
docker push "${REGISTRY_PUSH}/${IMAGE}:${CORPUS_TAG}"
- name: Link container package to this repo
env:
GITEA_TOKEN: ${{ secrets.REGISTRY_TOKEN }}
run: |
OWNER="${{ github.repository_owner }}"
PKG="${{ github.event.repository.name }}"
BODY=$(mktemp)
CODE=$(curl -sS -o "$BODY" -w "%{http_code}" -X POST \
-H "Authorization: token ${GITEA_TOKEN}" \
"https://${REGISTRY_PULL}/api/v1/packages/${OWNER}/container/${PKG}/-/link/${PKG}")
echo "link http=$CODE body=$(cat "$BODY")"
case "$CODE" in
201) echo "linked package to ${OWNER}/${PKG}" ;;
400) echo "already linked — ok" ;;
*) echo "unexpected status $CODE"; exit 1 ;;
esac
- name: Prune old container versions
# GC requires broader scope than REGISTRY_TOKEN's push perms
# (HTTP 403 on /packages/.../versions). Non-critical —
# housekeeping only. Don't fail the whole run.
# TODO: issue separate PAT with admin:package scope and set
# as PACKAGES_ADMIN_TOKEN.
continue-on-error: true
env:
GITEA_TOKEN: ${{ secrets.REGISTRY_TOKEN }}
run: |
python scripts/registry_gc.py \
--owner "${{ github.repository_owner }}" \
--package "${{ github.event.repository.name }}" \
--keep-days 180 \
--keep-latest 6