claudeandClaude Opus 5
86f2be1d71
requirements.txt asked for `mcp[fastmcp]>=1.0.0` with no upper bound.
mcp 2.0.0 (2026-07-28) removed `mcp.server.fastmcp` — renamed FastMCP to
MCPServer under mcp.server.mcpserver — and dropped the [fastmcp] extra.
docs_mcp/server.py:28 still imports the 1.x path.
The 2026-07-01 image predated 2.0.0, so it resolved to 1.x and ran fine.
The 2026-09-01 rebuild resolved to mcp 2.1.1, and the container has been
crash-looping ever since:
File "/app/docs_mcp/server.py", line 28, in <module>
from mcp.server.fastmcp import FastMCP
ModuleNotFoundError: No module named 'mcp.server.fastmcp'
That is nine days of seed-mcp being down for Drawbar's advisor. Same
failure took zerto-docs down on 2026-08-11; crop-chem-docs and
opsramp-docs were pinned then, seed-mcp was missed.
This is a ceiling to restore service, not the destination — the 2.x port
lands separately. It also adds the guard that would have caught this: the
build now runs `python -c "import docs_mcp.server"` inside the freshly
built image and refuses to push if that fails. Import is side-effect-free
(lazy singletons), so the check needs no Ollama or Chroma.
Still unpinned and due to break on their next rebuild: morpheus-docs,
hvm-docs.
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01FnVuG79cYPcRLTp4pC8ujR
227 lines
10 KiB
YAML
227 lines
10 KiB
YAML
name: Monthly seed catalog refresh
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# Runs the full pipeline: scrape all GREEN sources → rebuild indexes
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# → push image. Cron'd once a month (1st @ 06:00 UTC). Skip the
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# reindex + image-push if the scrape produced no diff against the
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# committed corpus.
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#
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# Seed catalogs move slowly (vendors release new hybrids 1-2x/year
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# at field-day timing); monthly cadence is plenty.
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#
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# Total runtime budget: ~2-3 h end-to-end across all 5 GREEN sources.
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# Bayer is the longest (~475 varieties, ~45 min). Beck's PFR is the
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# heaviest single-source (~2,089 docs via Sanity GROQ pagination).
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on:
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schedule:
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- cron: "0 6 1 * *" # 1st of each month, 06:00 UTC
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workflow_dispatch:
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inputs:
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force_build:
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description: "Rebuild indexes + push image even if corpus is unchanged"
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type: boolean
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default: false
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sources:
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description: "Sources to scrape (comma-separated, blank = all GREEN)"
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type: string
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default: ""
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env:
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# Self-hosted Gitea registry on the same LAN as the runner.
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# CF caps push body at 100 MB, so push via LAN endpoint; pull
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# through the public hostname (response bodies aren't capped).
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REGISTRY_PUSH: 192.168.0.2:1234
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REGISTRY_PULL: git.jpaul.io
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IMAGE: ${{ github.repository }}
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# Embedder pool — 3 GPU-pinned endpoints reachable from the runner
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# container on .0.2. Measured throughput (50-chunk batches on
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# nomic-embed-text):
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# .0.125:11434 (4090) 242 embeds/sec ← weighted ×4
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# .0.2:11436 (GPU-pinned) 108 embeds/sec ← weighted ×2
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# .0.2:11435 (GPU-pinned) 72 embeds/sec ← weight 1
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# NOTE: .0.2:11434 is NOT GPU-pinned — exclude.
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# NOTE: `localhost:11434` works locally during dev but resolves to the
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# runner CONTAINER's own localhost in CI (no Ollama there → 111
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# connection refused). Use only LAN endpoints from CI.
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OLLAMA_URL: http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.125:11434,http://192.168.0.2:11436,http://192.168.0.2:11436,http://192.168.0.2:11435
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EMBED_MODEL: nomic-embed-text
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PRODUCT_NAME: crop_seed
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jobs:
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refresh:
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runs-on: docker
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container:
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image: catthehacker/ubuntu:act-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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with:
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# Full history — required for the digest-history step
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# to walk git log. Default fetch-depth: 1 silently
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# produces a 0-byte history file.
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fetch-depth: 0
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- name: Verify image name resolves
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# ${{ github.event.repository.name }} silently resolves to EMPTY on
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# schedule events (Gitea >=1.27), which built the tag
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# "192.168.0.2:1234/justin/:latest" and failed the build only AFTER
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# the full scrape. IMAGE now comes from github.repository; this step
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# fails in seconds if it ever goes empty again.
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run: |
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echo "IMAGE=${IMAGE}"
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case "${IMAGE}" in
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*/?*) ;;
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*) echo "ERROR: IMAGE did not resolve to owner/repo"; exit 1 ;;
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esac
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Install dependencies
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run: |
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python -m pip install -q --upgrade pip
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python -m pip install -q -r requirements.txt
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# ---- Phase 1: scrape ---------------------------------------
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- name: Scrape Bayer seeds (DEKALB + Asgrow + WestBred)
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'bayer_seeds') }}
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run: python -m scrape.runner --source bayer_seeds --force
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- name: Scrape Golden Harvest
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'golden_harvest') }}
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run: python -m scrape.runner --source golden_harvest --force
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- name: Scrape NK
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'nk') }}
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run: python -m scrape.runner --source nk --force
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- name: Scrape AgriPro
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'agripro') }}
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run: python -m scrape.runner --source agripro --force
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- name: Scrape AgriPro regional trial PDFs
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'agripro_trials') }}
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run: python -m scrape.runner --source agripro_trials --force
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- name: Scrape Golden Harvest plot reports (cross-vendor yield trials)
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'gh_plot_reports') }}
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# Heaviest single source — ~4,600 docs at 1 req/sec ≈ 70 min.
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# Wraps the bulk of CI time; runs late so an earlier failure
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# doesn't waste 70 min before failing.
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run: python -m scrape.runner --source gh_plot_reports --force
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- name: Scrape Beck's PFR research corpus
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if: ${{ inputs.sources == '' || contains(inputs.sources, 'becks_pfr') }}
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# Deferred (returns 0 cleanly from a stub) — implementation
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# pending. Public Sanity GROQ at mc8v24rf.api.sanity.io.
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run: python -m scrape.runner --source becks_pfr --force
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# ---- Commit corpus changes + retry-on-race -----------------
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- name: Commit corpus changes (if any)
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id: commit
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run: |
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git config user.name "seed-mcp-refresh"
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git config user.email "[email protected]"
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git add sources.json corpus
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if git diff --cached --quiet; then
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echo "no corpus changes — skipping reindex and image build"
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echo "changed=false" >> "$GITHUB_OUTPUT"
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exit 0
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fi
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echo "changed=true" >> "$GITHUB_OUTPUT"
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ts=$(date -u +"%Y-%m-%dT%H:%MZ")
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n_bayer=$(find corpus/bayer_seeds -name '*.json' 2>/dev/null | wc -l)
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n_gh=$(find corpus/golden_harvest -name '*.json' 2>/dev/null | wc -l)
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n_nk=$(find corpus/nk -name '*.json' 2>/dev/null | wc -l)
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n_ag=$(find corpus/agripro -name '*.json' 2>/dev/null | wc -l)
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n_agt=$(find corpus/agripro_trials -name '*.json' 2>/dev/null | wc -l)
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n_ghpr=$(find corpus/gh_plot_reports -name '*.json' 2>/dev/null | wc -l)
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n_pfr=$(find corpus/becks_pfr -name '*.json' 2>/dev/null | wc -l)
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git commit -m "monthly refresh: ${ts} — bayer=${n_bayer} gh=${n_gh} nk=${n_nk} agripro=${n_ag} ag_trials=${n_agt} gh_plot_reports=${n_ghpr} pfr=${n_pfr}"
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attempt=1
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while [ $attempt -le 3 ]; do
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if git push; then
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echo "pushed corpus changes (attempt $attempt)"
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break
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fi
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if [ $attempt -eq 3 ]; then
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echo "push still failing after 3 attempts"; exit 1
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fi
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git fetch origin main
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git rebase origin/main || { echo "rebase conflict"; exit 1; }
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attempt=$((attempt + 1))
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done
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# ---- Rebuild Chroma + BM25 ---------------------------------
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- name: Rebuild indexes
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if: steps.commit.outputs.changed == 'true' || inputs.force_build == true
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run: python -m rag.index --rebuild
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# ---- Build & push image ------------------------------------
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- name: Log in to Gitea container registry
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if: steps.commit.outputs.changed == 'true' || inputs.force_build == true
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run: echo "${{ secrets.REGISTRY_TOKEN }}" | docker login "${REGISTRY_PUSH}" -u "${{ github.repository_owner }}" --password-stdin
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- name: Build & push image
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if: steps.commit.outputs.changed == 'true' || inputs.force_build == true
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# Tags: :latest (Watchtower target), :<sha12> (rollback pin),
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# :corpus-<YYYY.MM.DD> (links image to corpus version so
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# Drawbar can pin to a specific seed-catalog snapshot).
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run: |
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SHA_TAG=$(echo "$GITHUB_SHA" | cut -c1-12)
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CORPUS_TAG="corpus-$(date -u +%Y.%m.%d)"
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docker build \
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-t "${REGISTRY_PUSH}/${IMAGE}:latest" \
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-t "${REGISTRY_PUSH}/${IMAGE}:${SHA_TAG}" \
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-t "${REGISTRY_PUSH}/${IMAGE}:${CORPUS_TAG}" \
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.
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# Smoke: the image must at least import its server module before we
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# publish it. mcp 2.x renamed mcp.server.fastmcp -> mcp.server.mcpserver,
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# so an unpinned dep produced a green build that crash-looped in prod
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# for 9 days (2026-09-01 -> 09-10). Import is side-effect-free here
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# (lazy singletons), so this needs no Ollama/Chroma.
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docker run --rm --entrypoint python \
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"${REGISTRY_PUSH}/${IMAGE}:latest" -c "import docs_mcp.server"
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docker push "${REGISTRY_PUSH}/${IMAGE}:latest"
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docker push "${REGISTRY_PUSH}/${IMAGE}:${SHA_TAG}"
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docker push "${REGISTRY_PUSH}/${IMAGE}:${CORPUS_TAG}"
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- name: Link container package to this repo
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if: steps.commit.outputs.changed == 'true' || inputs.force_build == true
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env:
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GITEA_TOKEN: ${{ secrets.REGISTRY_TOKEN }}
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run: |
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OWNER="${{ github.repository_owner }}"
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PKG="${GITHUB_REPOSITORY##*/}"
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BODY=$(mktemp)
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CODE=$(curl -sS -o "$BODY" -w "%{http_code}" -X POST \
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-H "Authorization: token ${GITEA_TOKEN}" \
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"https://${REGISTRY_PULL}/api/v1/packages/${OWNER}/container/${PKG}/-/link/${PKG}")
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echo "link http=$CODE body=$(cat "$BODY")"
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case "$CODE" in
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201) echo "linked package to ${OWNER}/${PKG}" ;;
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400) echo "already linked — ok" ;;
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*) echo "unexpected status $CODE"; exit 1 ;;
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esac
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- name: Prune old container versions
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# GC requires broader scope than REGISTRY_TOKEN's push perms
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# (HTTP 403 on /packages/.../versions). Non-critical
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# housekeeping. TODO: issue separate PAT with admin:package
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# scope. Until then continue-on-error keeps a failed prune
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# from breaking the whole refresh.
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if: steps.commit.outputs.changed == 'true' || inputs.force_build == true
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continue-on-error: true
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env:
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GITEA_TOKEN: ${{ secrets.REGISTRY_TOKEN }}
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run: |
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python scripts/registry_gc.py \
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--owner "${{ github.repository_owner }}" \
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--package "${GITHUB_REPOSITORY##*/}" \
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--keep-days 180 \
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--keep-latest 6
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